RNA Polymerase (RNAP)
| A |
Promoter site |
|
| B | Initiation site | |
| C | Regulator site | |
| D | Stop site |
| A |
Promoter site |
|
| B | Initiation site | |
| C | Regulator site | |
| D | Stop site |
(40) Promoter site REF: Harper 27`h ed p. 349
RNA polymerase has sigma sub unit which recognises promotor nucleotide sequence. It does not require primer and has no proof reading activity
Types:
- r RNA
- m RNA, mi RNA, Sn RNA
- t- RNA, 5s-rRNA, some SnRNA
| A | Template (ds DNA) | |
| B |
Activated precursors (ATP, GTP, UTP, CTP) |
|
| C |
Divalent metal ions (Mn2+, Mg2+) |
|
| D |
Primer |
DNA polymerase can only elongate existing polynucleotide chains, and thus requires a primer. RNA polymerase can initiate RNA synthesis de novo and hence does not require a primer.
Ref: Molecular Biology of the Gene Watson, 2004, Page 376 ; Lippincott’s Illustrated Q & A Review of Biochemistry by Michael A. Lieberman, Rick Ricer, 2009, Page 294
The sigma (cr) subunit of prokaryotic RNA polymerase:
| A |
Binds the antibiotic rifampicin |
|
| B |
Is inhibited by a-amanitin |
|
| C |
Specifically recognizes the promoter site |
|
| D |
Is part of the core enzyme |
C i.e. Specifically recognizes the promoter site
RNA polymerase does not require :
| A |
Template (ds DNA) |
|
| B |
Activated precursors (ATP, GTP, UTP, CTP) |
|
| C |
Divalent metal ions (Mn2+, Mg2+) |
|
| D |
Primer |
D i.e. Primer
The drug inhibiting DNA-dependent RNA polymerase in Mycobacteria is –
| A |
INH |
|
| B |
Rifampicin |
|
| C |
Ciprofloxacin |
|
| D |
Ethionamide |
Ans. is ‘b’ i.e., Rifampicin
Mechanism of action of important antitubercular drugs
o Rifampicin —> Inhibits DNA dependent RNA synthesis by inhibiting RNA polymerase.
o INH —> Inhibits synthesis of mycolic acid which is a component of mycobacterial cell wall. o Pyrazinamide —> Inhibits synthesis of mycolic acid.
o Streptomycin —> Inhibits protein synthesis (translation).
o Ethambutol —> Inhibits incorporation ofmycolic acid into bacterial cell wall by inhibiting arbinosyltransferase.
| A |
Primase |
|
| B |
Helicase |
|
| C |
Ligase |
|
| D |
Topoisomerase |
DNA synthesis cannot commence with deoxyribonucleotides because DNA polymerase cannot add a mononucleotide to another mononucleotide.
- Thus, DNA polymerase cannot initiate synthesis of complementary DNA synthesis strand of DNA on a totally single stranded template.
- For this, they require RNA primer, which is a short piece of RNA formed by enzyme primase (RNA polymerase) using DNA as a template.
- RNA primer is then extended by addition of deoxyribonucleotides.
- Later on, the ribonucleotides of the primer are replaced by deoxyribonucleotides.
- Primase is actually a DNA primase which has RNA polymerase activity. This DNA primase is also called DNA polymerase.

